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Payroll and HR software for medical clinics and healthcare

Trying to roster large amounts of staff across several clinics and departments? Or tracking remote caregivers working multiple locations?

Meet Microkeeper; an Australian software solution fit for your healthcare team:

  • Online staff onboarding, collecting required documentation
  • Advanced rostering with live budget overviews
  • Time, attendance and location tracking
  • Accurate, full-service payroll
Medical setup with doctors and assistant
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Rated 4.5 on Apple App Store

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Rated 4.8 on Xero App Store

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Rated 4.2 on Capterra

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Rated 4.6 on Trustpilot

Support your healthcare team with
people-centred payroll and HR 

People who work in medical care give their best every day. We think they also deserve the best healthcare payroll and HR software.

Microkeeper streamlines all elements of workforce administration for healthcare workers in one spot. Cost-effective and easy.

We help automate workflows for hospitals, day surgeries, aged care, pathology services and in-home care.

Doctors using Microkeeper on phone

Save admin time with tools fit for carers

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Full Service Payroll

Accurate, automated payroll processing based on preset Award Interpretation allows you to turn timesheets to payroll data. Super processing and Single Touch Payroll reporting can be done in a matter of minutes.

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Compliance with ease

Microkeeper collects and stores all legally required medical and healthcare documentation from your employees in a digital format. Expiry notifications help you remain compliant throughout your staff's tenure.

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iOS and Android App

Increase accountability with personal dashboards on the Microkeeper app. Enable GPS clocking restriction to ensure caregivers are at the correct location whenever they clock on/off.

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Automated Rostering

Schedule staff across different locations and roles with fully automated rostering. Send roster notifications to staff, let them put in shift bids and sync rosters directly with their calendar app.

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Maximise Resources

Control labour costs with our budget tool. Set targets and see live roster budget updates to help monitor your staff costs, increase budget efficiency and profitability.

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Leave Management

Track expected leave balances and staffing level with smart absence management. Time off can be requested and approved on the app or in browser. All synced with rosters.

Join thousands of happy Australian users

Sign up for a free Microkeeper trial or book a demo, no strings attached.

Build a proactive and resilient healthcare business with centralised software

Private and public healthcare services around Australia are embracing the age of digital transformation.

Integrated cloud software that unifies HR and payroll unlocks short and long term value for expanding sectors like health and aged care, pharma, clinics and diagnostics.

  • Remove the human errors and time inefficiencies of manual processes and future-proof your operations.
  • Remain adaptable in the face of uncertain and rapid changes in workplace structures.
  • Get a competitive edge by saving costs and making use of your workforce in the most efficient way.
  • Track licenses and skills relevant to the medical industry.
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nurse in hospital

Workforce Efficiency

Accelerate the workflows of your health care organisation with automation. Remove manual tasks, eliminate double handling of data and reduce the need to switch between multiple systems and apps.


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Payroll Automation

Make payday a breeze with payroll automation. Capture accurate timesheets with any of our tools and let Microkeeper convert all into compliant payslips based on your personalised award interpretation.


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Cost Saving

Eliminate software costs by centralising all touchpoints of workforce management in one comprehensive solution. Boost margins and scale quickly with efficient workforce management and employee administration.


Workforce management software fit for clinics and healthcare businesses

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Analysis and Reports

Uncover the broad trends across your medical organisation or hone in and keep an eye on specific departments with tailored, grouped reports.

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Easy Onboarding

Move to paperless onboarding with an online experience that lets your employees self-onboard, providing all necessary information in our employee console.

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Messaging Platform

Microkeeper's app allows you to communicate updates easily to groups or individuals. 
Features include sight and sign and instant messaging.

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Online Payslips

Let employees access current and historical digital payslips in their Microkeeper account without the need to contact the payroll team.

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Accounting Integration

Send your payroll data directly from Microkeeper to accounting software like Xero, Quickbooks, MYOB or any other platforms.

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Expert Support

Get started with implementation support and expert guidance from your account manager, operating from our Australian HQ.

Book a chat and find out
how we can help streamline your medical business

Microkeeper software loves hospitality

Join thousands of medical clinics, aged care facilities and allied health professionals around Australia who use our agile and flexible software.

Book a chat with a Microkeeper consultant and we can discuss how we can meet your requirements.