^Login

How Payroll Works

Payroll in Microkeeper pays your staff for each pay period from their approved timesheets. Each pay cycle, such as your weekly staff, has a pay run: it works out every employee's pay, super, tax and leave as a payslip. You check the payslips, pay your team from an ABA file, and report the pay run to the ATO with Single Touch Payroll.

Diagram of the payroll workflow in five stages. 1 Approve: timesheets and leave for the pay period. 2 Run: start the pay run, which applies pay rules, leave, super and tax. 3 Review: check payslips, change lines, bulk changes and reprocess. 4 Pay: download the ABA file for your bank, then lock the pay run so staff see their payslips. 5 Report: lodge Single Touch Payroll and pay super.

Required planAll plans
Required accessPayroll - Full Access to run pay runs. Payroll - Medium Access can view payslips, download the ABA file and lock a pay run, without changing pay.

Payroll workflow in Microkeeper

Approve the pay period

Pay runs pay what's been approved.

Run the pay run

Microkeeper works out each payslip.

Review the payslips

Check them before anyone is paid.

  • Add or change payslip lines, one employee at a time or in bulk.
  • Reprocess after you change a timesheet or a rule.
  • Pay final pay to staff who are leaving.

Pay your team

Pay from your bank, then lock the pay run.

  • Download the ABA file and upload it to your bank.
  • Lock the pay run, and staff see their payslips online. See Complete the pay run.

Report and pay super

Tell the ATO, and pay super funds.


Payments Classification Chart

Every payslip line has a Class, chosen on the rule or line that pays it. The Class decides what the payment is entitled to: which hours it counts towards, whether it builds up leave and attracts super, and whether it's taxed. Its STP Category decides how it's reported to the ATO. When the STP Category is Gross, the Class decides that too: Normal is reported as gross pay, Overtime as overtime, and Bonus as bonuses and commissions. See STP Reporting Codes.

ClassOrdinary hoursOvertime hoursBuilds up leaveSuperTaxed
NormalYesNoYesYesYes
OvertimeNoYesNoSet per employeeYes
BonusNoNoNoYesYes
ExtraNoNoNoNoYes
AllowanceNoNoNoNoYes
Tax Free AllowanceNoNoNoNoNo
ReimbursementNoNoNoNoNo
Workers Comp EntitlementsNoNoBy state, belowNoYes
  • Ordinary hours and Overtime hours are the hour totals on the payslip and in reports.
  • Builds up leave counts the line's hours, not its multiplier: 4 hours at double time build up 4 hours of leave.
  • Overtime attracts super when the employee's Super Ordinary Hours is set to On total hours.
  • Allowances: a task allowance, such as first aid or higher duties, is qualifying earnings for super, so give it Class Bonus with STP Category Tasks. An expense allowance, such as tool or laundry, isn't, so give it Class Allowance. See How Super Works.

How a leave payment's Class changes balances

Leave is paid as a payslip line too, and its Class decides what it does to the employee's balances:

ClassBuilds up leaveComes off the balanceSuperUsed for
NormalYesYesYesLeave taken in the usual way
OvertimeNoYesSet per employeeLeave paid out when someone leaves
BonusNoYesYesLeave cashed out
ExtraNoNoNoCorrections: paying leave without changing balances

Workers Comp Entitlements by state

Hours paid as Workers Comp Entitlements build up leave in the states that require it. The state comes from the Timezone on the employee's profile.

StateAnnual LeavePersonal LeaveLong Service Leave
VICYesNoYes
NSWYesNoYes
ACTYesNoYes
QLDYesYesYes
NTNoNoNo
WAYesYesYes
SAYes, for the first 52 weeksYesYes
TASYesNoYes

In SA, once an employee has been on workers compensation for 52 weeks, pay their hours with a Class that doesn't build up annual leave.


Payroll guides

Run a Pay Run

Start, review, change and complete a pay run.

Leave and Public Holidays

How leave and public holidays reach the payslip.


What payroll relies on

  • ABNs and Pay Cycles: each pay cycle's period, payment days and the bank account its ABA file pays from.
  • Each employee's profile: their pay cycle, start date, rates, tax, super and bank details. See Employees.
  • Pay rules: how timesheet hours are paid.
  • Single Touch Payroll: reporting each pay run to the ATO.